ncorr::details Namespace Reference

Classes
class	all_range
class	base_interp
class	base_iterator
class	base_linsolver
class	base_region
class	bool_iterator
class	bool_region
class	CHOL_linsolver
class	cubic_interp
class	cubic_interp_precompute
class	disp_nloptimizer
class	interface_interp
class	interface_iterator
class	interface_linsolver
class	interface_region
class	last_index
class	linear_interp
class	LU_linsolver
class	nearest_interp
class	nlinfo_incrementor
class	nloptimizer_base
class	QR_linsolver
class	quintic_interp
class	quintic_interp_precompute
class	ROI2D_contig_subregion_generator
class	ROI2D_incrementor
class	simple_iterator
class	simple_region
struct	sparse_tree_element
class	sub_iterator
class	sub_region
class	subregion_nloptimizer

Functions
template<typename T_storage >
void	quintic_bspline_recursive_1d (T_storage *s, std::ptrdiff_t N, std::ptrdiff_t stride=1)
void	add_to_sparse_tree (std::set< sparse_tree_element > &sparse_tree, const sparse_tree_element &ste)
Array2D< double > &	inpaint_nlinfo (Array2D< double > &A, const ROI2D::region_nlinfo &nlinfo)
Array2D< double >	update_boundary_skip_all (const Array2D< double > &boundary, const Disp2D::nlinfo_interpolator &disp_interp, const ROI2D::difference_type roi_scalefactor)
Array2D< double >	update_boundary_skip_invalid (const Array2D< double > &boundary, const Disp2D::nlinfo_interpolator &disp_interp, const ROI2D::difference_type roi_scalefactor, const ROI2D::difference_type roi_height, const ROI2D::difference_type roi_width, const ROI2D::difference_type margin=0)
Array2D< double >	matlab_update_boundary (const Array2D< double > &boundary, const Disp2D::nlinfo_interpolator &disp_interp, const ROI2D::difference_type roi_scalefactor, const ROI2D::difference_type size_mask_height, const ROI2D::difference_type size_mask_width, const ROI2D::difference_type radius)
Array2D< ROI2D::difference_type > &	get_nlinfo_SDA (Array2D< ROI2D::difference_type > &SDA, const ROI2D::region_nlinfo &nlinfo, Array2D< bool > &mask_buf, Array2D< bool > &mask_buf_new)
Array2D< ROI2D::difference_type >	get_ROI_SDA (const ROI2D &roi)
Array2D< double >	get_seed_params (const Data2D &data, const ROI2D::region_nlinfo &nlinfo, const disp_nloptimizer &d_nloptimizer, const Array2D< ROI2D::difference_type > &SDA, Array2D< double > &params_buf)
bool	analyze_point (const Array2D< double > &queue_params, ROI2D::difference_type p1_new_delta, ROI2D::difference_type p2_new_delta, const ROI2D::region_nlinfo &nlinfo, ROI2D::difference_type roi_scalefactor, const disp_nloptimizer &d_nloptimizer, const Array2D< ROI2D::difference_type > &SDA, std::priority_queue< Array2D< double >, std::vector< Array2D< double > >, std::function< bool(const Array2D< double > &, const Array2D< double > &)> > &queue, Array2D< bool > &A_new_ap, Array2D< double > &params_buf)
Array2D< double >	get_centroid (const ROI2D::region_nlinfo &nlinfo)
std::pair< std::vector< ROI2D::region_nlinfo >, std::vector< ROI2D::region_nlinfo > >	nlinfo_line_split (const Array2D< double > &direc, const Array2D< double > &origin, ROI2D::difference_type partition_offset, const ROI2D::region_nlinfo &nlinfo, Array2D< ROI2D::difference_type > &partition_diagram, Array2D< bool > &mask_buf)
void	nlinfo_contig_expansion (const ROI2D::region_nlinfo &sub_nlinfo, const ROI2D::region_nlinfo &nlinfo, ROI2D::difference_type val, Array2D< ROI2D::difference_type > &A, Array2D< bool > &A_ap)
std::pair< std::pair< ROI2D::region_nlinfo, ROI2D::region_nlinfo >, bool >	nlinfo_contig_split (ROI2D::difference_type partition_offset, const ROI2D::region_nlinfo &nlinfo, Array2D< ROI2D::difference_type > &partition_diagram, Array2D< bool > &mask_buf)
bool	recursive_nlinfo_partition_diagram (ROI2D::difference_type part_num1, ROI2D::difference_type part_num2, const ROI2D::region_nlinfo &nlinfo, Array2D< ROI2D::difference_type > &partition_diagram, Array2D< bool > &mask_buf)
Array2D< ROI2D::difference_type > &	get_nlinfo_partition_diagram (const ROI2D::region_nlinfo &nlinfo, ROI2D::difference_type num_partitions, Array2D< ROI2D::difference_type > &partition_diagram, Array2D< bool > &mask_buf)
Array2D< ROI2D::difference_type >	get_ROI_partition_diagram (const ROI2D &roi, ROI2D::difference_type num_partitions)
Array2D< ROI2D::difference_type >	get_nlinfo_partition_diagram_seeds (const Array2D< ROI2D::difference_type > &partition_diagram, const ROI2D::region_nlinfo &nlinfo, ROI2D::difference_type num_partitions, Array2D< ROI2D::difference_type > &SDA, Array2D< bool > &mask_buf1, Array2D< bool > &mask_buf2)
std::vector< Array2D< ROI2D::difference_type > >	get_ROI_partition_diagram_seeds (const Array2D< ROI2D::difference_type > &partition_diagram, const ROI2D &roi, ROI2D::difference_type num_partitions)
Array2D< double >	get_seed_params (const Array2D< ROI2D::difference_type > &seeds_pos, const subregion_nloptimizer &sr_nloptimizer, Array2D< double > &params_buf)
bool	analyze_point (const Array2D< double > &queue_params, ROI2D::difference_type p1_delta, ROI2D::difference_type p2_delta, const ROI2D::region_nlinfo &nlinfo, ROI2D::difference_type scalefactor, const subregion_nloptimizer &sr_nloptimizer, double cutoff_corrcoef, double cutoff_delta_disp, std::priority_queue< Array2D< double >, std::vector< Array2D< double > >, std::function< bool(const Array2D< double > &, const Array2D< double > &)> > &queue, Array2D< bool > &A_ap, Array2D< double > &params_buf)
void	worker_RGDIC (subregion_nloptimizer sr_nloptimizer, ROI2D roi_reduced, ROI2D::difference_type scalefactor, double cutoff_corrcoef, double cutoff_delta_disp, Array2D< double > &A_v, Array2D< double > &A_u, Array2D< double > &A_cc, Array2D< bool > &A_ap, Array2D< bool > &A_vp)
Disp2D	update (const Disp2D &disp, INTERP interp_type, ROI_UPDATE_MODE mode=ROI_UPDATE_MODE::SKIP_INVALID)
cv::Mat	cv_ncorr_data_over_img (const Image2D &img, const Data2D &data, double alpha, double min_data, double max_data, bool enable_colorbar=true, bool enable_axes=true, bool enable_scalebar=true, const std::string &units="pixels", double units_per_pixel=1.0, double num_units=-1.0, double font_size=1.0, ROI2D::difference_type num_tick_marks=11, int colormap=cv::COLORMAP_JET)
void	add_interacting_nodes (ROI2D::difference_type np_adj_p2, ROI2D::difference_type np_loaded_top, ROI2D::difference_type np_loaded_bottom, Array2D< std::vector< ROI2D::difference_type > > &overall_nodelist, Array2D< std::vector< bool > > &overall_active_nodepairs, std::stack< ROI2D::difference_type > &queue_np_idx)
Array2D< double >	calc_boundary (const Array2D< bool > &mask, double init_p1, double init_p2, ROI2D::difference_type init_direc=0)
void	simple_contig_subregion_add_interacting_nodes (ROI2D::difference_type np_adj_p2, ROI2D::difference_type np_loaded_top, ROI2D::difference_type np_loaded_bottom, const ROI2D::ROI2D::region_nlinfo &nlinfo_roi, const ROI2D::ROI2D::region_nlinfo &nlinfo_simple, Array2D< bool > &active_nodepairs, std::stack< ROI2D::difference_type > &queue_np_idx)

Variables
std::mutex	fftw_mutex

Function Documentation

add_interacting_nodes()

void ncorr::details::add_interacting_nodes	(	ROI2D::difference_type	np_adj_p2,
		ROI2D::difference_type	np_loaded_top,
		ROI2D::difference_type	np_loaded_bottom,
		Array2D< std::vector< ROI2D::difference_type > > &	overall_nodelist,
		Array2D< std::vector< bool > > &	overall_active_nodepairs,
		std::stack< ROI2D::difference_type > &	queue_np_idx
	)

Definition at line 437 of file ROI2D.cpp.

add_to_sparse_tree()

void ncorr::details::add_to_sparse_tree	(	std::set< sparse_tree_element > &	sparse_tree,
		const sparse_tree_element &	ste
	)

Definition at line 128 of file Data2D.cpp.

analyze_point() [1/2]

bool ncorr::details::analyze_point	(	const Array2D< double > &	queue_params,
		ROI2D::difference_type	p1_delta,
		ROI2D::difference_type	p2_delta,
		const ROI2D::region_nlinfo &	nlinfo,
		ROI2D::difference_type	scalefactor,
		const subregion_nloptimizer &	sr_nloptimizer,
		double	cutoff_corrcoef,
		double	cutoff_delta_disp,
		std::priority_queue< Array2D< double >, std::vector< Array2D< double > >, std::function< bool(const Array2D< double > &, const Array2D< double > &)>	,
		&	queue,
		Array2D< bool > &	A_ap,
		Array2D< double > &	params_buf
	)

Definition at line 1821 of file ncorr.cpp.

analyze_point() [2/2]

bool ncorr::details::analyze_point	(	const Array2D< double > &	queue_params,
		ROI2D::difference_type	p1_new_delta,
		ROI2D::difference_type	p2_new_delta,
		const ROI2D::region_nlinfo &	nlinfo,
		ROI2D::difference_type	roi_scalefactor,
		const disp_nloptimizer &	d_nloptimizer,
		const Array2D< ROI2D::difference_type > &	SDA,
		std::priority_queue< Array2D< double >, std::vector< Array2D< double > >, std::function< bool(const Array2D< double > &, const Array2D< double > &)>	,
		&	queue,
		Array2D< bool > &	A_new_ap,
		Array2D< double > &	params_buf
	)

Definition at line 979 of file ncorr.cpp.

calc_boundary()

Array2D< double > ncorr::details::calc_boundary	(	const Array2D< bool > &	mask,
		double	init_p1,
		double	init_p2,
		ROI2D::difference_type	init_direc = 0
	)

Definition at line 755 of file ROI2D.cpp.

cv_ncorr_data_over_img()

cv::Mat ncorr::details::cv_ncorr_data_over_img	(	const Image2D &	img,
		const Data2D &	data,
		double	alpha,
		double	min_data,
		double	max_data,
		bool	enable_colorbar = true,
		bool	enable_axes = true,
		bool	enable_scalebar = true,
		const std::string &	units = "pixels",
		double	units_per_pixel = 1.0,
		double	num_units = -1.0,
		double	font_size = 1.0,
		ROI2D::difference_type	num_tick_marks = 11,
		int	colormap = cv::COLORMAP_JET
	)

Definition at line 3815 of file ncorr.cpp.

get_centroid()

Array2D< double > ncorr::details::get_centroid

(

const ROI2D::region_nlinfo &

nlinfo

)

Definition at line 1382 of file ncorr.cpp.

get_nlinfo_partition_diagram()

Array2D< ROI2D::difference_type > & ncorr::details::get_nlinfo_partition_diagram	(	const ROI2D::region_nlinfo &	nlinfo,
		ROI2D::difference_type	num_partitions,
		Array2D< ROI2D::difference_type > &	partition_diagram,
		Array2D< bool > &	mask_buf
	)

Definition at line 1693 of file ncorr.cpp.

get_nlinfo_partition_diagram_seeds()

Array2D< ROI2D::difference_type > ncorr::details::get_nlinfo_partition_diagram_seeds	(	const Array2D< ROI2D::difference_type > &	partition_diagram,
		const ROI2D::region_nlinfo &	nlinfo,
		ROI2D::difference_type	num_partitions,
		Array2D< ROI2D::difference_type > &	SDA,
		Array2D< bool > &	mask_buf1,
		Array2D< bool > &	mask_buf2
	)

Definition at line 1734 of file ncorr.cpp.

get_nlinfo_SDA()

Array2D< ROI2D::difference_type > & ncorr::details::get_nlinfo_SDA	(	Array2D< ROI2D::difference_type > &	SDA,
		const ROI2D::region_nlinfo &	nlinfo,
		Array2D< bool > &	mask_buf,
		Array2D< bool > &	mask_buf_new
	)

Definition at line 866 of file ncorr.cpp.

get_ROI_partition_diagram()

Array2D< ROI2D::difference_type > ncorr::details::get_ROI_partition_diagram	(	const ROI2D &	roi,
		ROI2D::difference_type	num_partitions
	)

Definition at line 1713 of file ncorr.cpp.

get_ROI_partition_diagram_seeds()

std::vector< Array2D< ROI2D::difference_type > > ncorr::details::get_ROI_partition_diagram_seeds	(	const Array2D< ROI2D::difference_type > &	partition_diagram,
		const ROI2D &	roi,
		ROI2D::difference_type	num_partitions
	)

Definition at line 1775 of file ncorr.cpp.

get_ROI_SDA()

Array2D< ROI2D::difference_type > ncorr::details::get_ROI_SDA

(

const ROI2D &

roi

)

Definition at line 931 of file ncorr.cpp.

get_seed_params() [1/2]

Array2D< double > ncorr::details::get_seed_params	(	const Array2D< ROI2D::difference_type > &	seeds_pos,
		const subregion_nloptimizer &	sr_nloptimizer,
		Array2D< double > &	params_buf
	)

Definition at line 1795 of file ncorr.cpp.

get_seed_params() [2/2]

Array2D< double > ncorr::details::get_seed_params	(	const Data2D &	data,
		const ROI2D::region_nlinfo &	nlinfo,
		const disp_nloptimizer &	d_nloptimizer,
		const Array2D< ROI2D::difference_type > &	SDA,
		Array2D< double > &	params_buf
	)

Definition at line 948 of file ncorr.cpp.

inpaint_nlinfo()

Array2D< double > & ncorr::details::inpaint_nlinfo	(	Array2D< double > &	A,
		const ROI2D::region_nlinfo &	nlinfo
	)

Definition at line 139 of file Data2D.cpp.

matlab_update_boundary()

Array2D< double > ncorr::details::matlab_update_boundary	(	const Array2D< double > &	boundary,
		const Disp2D::nlinfo_interpolator &	disp_interp,
		const ROI2D::difference_type	roi_scalefactor,
		const ROI2D::difference_type	size_mask_height,
		const ROI2D::difference_type	size_mask_width,
		const ROI2D::difference_type	radius
	)

Definition at line 755 of file ncorr.cpp.

nlinfo_contig_expansion()

void ncorr::details::nlinfo_contig_expansion	(	const ROI2D::region_nlinfo &	sub_nlinfo,
		const ROI2D::region_nlinfo &	nlinfo,
		ROI2D::difference_type	val,
		Array2D< ROI2D::difference_type > &	A,
		Array2D< bool > &	A_ap
	)

Definition at line 1466 of file ncorr.cpp.

nlinfo_contig_split()

std::pair< std::pair< ROI2D::region_nlinfo, ROI2D::region_nlinfo >, bool > ncorr::details::nlinfo_contig_split	(	ROI2D::difference_type	partition_offset,
		const ROI2D::region_nlinfo &	nlinfo,
		Array2D< ROI2D::difference_type > &	partition_diagram,
		Array2D< bool > &	mask_buf
	)

Definition at line 1506 of file ncorr.cpp.

nlinfo_line_split()

std::pair< std::vector< ROI2D::region_nlinfo >, std::vector< ROI2D::region_nlinfo > > ncorr::details::nlinfo_line_split	(	const Array2D< double > &	direc,
		const Array2D< double > &	origin,
		ROI2D::difference_type	partition_offset,
		const ROI2D::region_nlinfo &	nlinfo,
		Array2D< ROI2D::difference_type > &	partition_diagram,
		Array2D< bool > &	mask_buf
	)

Definition at line 1410 of file ncorr.cpp.

quintic_bspline_recursive_1d()

template<typename T_storage >

void ncorr::details::quintic_bspline_recursive_1d ( T_storage *  s, std::ptrdiff_t  N, std::ptrdiff_t  stride = 1  )

inline

Definition at line 3747 of file Array2D.h.

recursive_nlinfo_partition_diagram()

bool ncorr::details::recursive_nlinfo_partition_diagram	(	ROI2D::difference_type	part_num1,
		ROI2D::difference_type	part_num2,
		const ROI2D::region_nlinfo &	nlinfo,
		Array2D< ROI2D::difference_type > &	partition_diagram,
		Array2D< bool > &	mask_buf
	)

Definition at line 1664 of file ncorr.cpp.

simple_contig_subregion_add_interacting_nodes()

void ncorr::details::simple_contig_subregion_add_interacting_nodes	(	ROI2D::difference_type	np_adj_p2,
		ROI2D::difference_type	np_loaded_top,
		ROI2D::difference_type	np_loaded_bottom,
		const ROI2D::ROI2D::region_nlinfo &	nlinfo_roi,
		const ROI2D::ROI2D::region_nlinfo &	nlinfo_simple,
		Array2D< bool > &	active_nodepairs,
		std::stack< ROI2D::difference_type > &	queue_np_idx
	)

Definition at line 1139 of file ROI2D.cpp.

update()

Disp2D ncorr::details::update	(	const Disp2D &	disp,
		INTERP	interp_type,
		ROI_UPDATE_MODE	mode = ROI_UPDATE_MODE::SKIP_INVALID
	)

Definition at line 3356 of file ncorr.cpp.

update_boundary_skip_all()

Array2D< double > ncorr::details::update_boundary_skip_all	(	const Array2D< double > &	boundary,
		const Disp2D::nlinfo_interpolator &	disp_interp,
		const ROI2D::difference_type	roi_scalefactor
	)

Definition at line 598 of file ncorr.cpp.

update_boundary_skip_invalid()

Array2D< double > ncorr::details::update_boundary_skip_invalid	(	const Array2D< double > &	boundary,
		const Disp2D::nlinfo_interpolator &	disp_interp,
		const ROI2D::difference_type	roi_scalefactor,
		const ROI2D::difference_type	roi_height,
		const ROI2D::difference_type	roi_width,
		const ROI2D::difference_type	margin = 0
	)

Definition at line 622 of file ncorr.cpp.

worker_RGDIC()

void ncorr::details::worker_RGDIC	(	subregion_nloptimizer	sr_nloptimizer,
		ROI2D	roi_reduced,
		ROI2D::difference_type	scalefactor,
		double	cutoff_corrcoef,
		double	cutoff_delta_disp,
		Array2D< double > &	A_v,
		Array2D< double > &	A_u,
		Array2D< double > &	A_cc,
		Array2D< bool > &	A_ap,
		Array2D< bool > &	A_vp
	)

Definition at line 1874 of file ncorr.cpp.

Variable Documentation

fftw_mutex

std::mutex ncorr::details::fftw_mutex

Definition at line 15 of file Array2D.cpp.